Articles by Rstats on LIBD rstats club

R 101

December 23, 2018 | Rstats on LIBD rstats club

HAPPY HOLIDAYS!!!????⛄????????❄ In the spirit of the coming new year and new beginnings, we created a tutorial for getting started or restarted with R. If you are new to R or have dabbled in R but haven’t used it much recently, then this post is for you. We will ... [Read more...]

R 101

December 23, 2018 | Rstats on LIBD rstats club

HAPPY HOLIDAYS!!!????⛄????????❄ In the spirit of the coming new year and new beginnings, we created a tutorial for getting started or restarted with R. If you are new to R or have dabbled in R but haven’t used it much recently, then this post is for you. We will ... [Read more...]

Quality Surrogate Variable Analysis

December 10, 2018 | Rstats on LIBD rstats club

By Amy Peterson Studying genetic differential expression using postmortem human brain tissue requires an understanding of the effect brain tissue degradation has on genetic expression. Particularly when brain tissue degradation confounds1 the differences in gene expression levels between subject groups. This problem of confounding necessitates measures from a control dataset ... [Read more...]

Quality Surrogate Variable Analysis

December 10, 2018 | Rstats on LIBD rstats club

By Amy Peterson Studying genetic differential expression using postmortem human brain tissue requires an understanding of the effect brain tissue degradation has on genetic expression. Particularly when brain tissue degradation confounds1 the differences in gene expression levels between subject groups. This problem of confounding necessitates measures from a control dataset ... [Read more...]

Hacking our way through UpSetR

July 26, 2018 | Rstats on LIBD rstats club

For our club meeting today we were going to summarize the Demystifying Data Science conference but we forgot that the videos are not released yet. Oops, we'll have to postpone our blog post. We didn't read the fine print that talk recordings will be available sometime next week. Sorry about ... [Read more...]

Hacking our way through UpSetR

July 26, 2018 | Rstats on LIBD rstats club

For our club meeting today we were going to summarize the Demystifying Data Science conference but we forgot that the videos are not released yet. Oops, we'll have to postpone our blog post. We didn't read the fine print that talk recordings will be available sometime next week. Sorry about ... [Read more...]

Textmate setup (Mac only)

March 10, 2018 | Rstats on LIBD rstats club

By L. Collado-Torres. For the past 6-7 years I have been using TextMate 2 as my text editor which I’ve found useful for R code, bash, Markdown, etc. You could also look into Sublime Text or use RStudio (post about this setup coming soon). Sometimes students are interested in this ... [Read more...]

Contributing to the LIBD rstats club

March 8, 2018 | Rstats on LIBD rstats club

In this blog post Leonardo Collado-Torres explains how to contribute posts to the LIBD rstats club. While some parameters are specific to this blog, you could also use this for creating your own community blog. Install necessary tools We first need to get the appropriate tools installed in our computer. 1. ... [Read more...]

Welcome to the LIBD rstats club!

March 8, 2018 | Rstats on LIBD rstats club

Welcome to the LIBD rstats club! A few months ago Carrie Wright and Leonardo Collado-Torres started an R + Journal club where we have been meeting every other week to talk about R packages and discuss journal articles in our field. Some examples of what we covered are tidyverse (Wickham, 2017), BiocStyle (... [Read more...]

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