Articles by R | Robrecht Cannoodt

anndata for R has a new home!

March 27, 2021 | R | Robrecht Cannoodt

anndata for R is brings h5ad processing to R with the same easy-to-use interface as the Python anndata API. No longer do you have to fiddle with hdf5r, reticulate or one of the many conversion functions. The code base for anndata for R has been moved... [Read more...]

anndata: annotated data in R

February 2, 2021 | R | Robrecht Cannoodt

anndata is a commonly used Python package for keeping track of data and learned annotations, and can be used to read from and write to the h5ad file format. It is also the main data format used in the scanpy python package (Wolf, Angerer, and Theis 2... [Read more...]

anndata for R

February 2, 2021 | R | Robrecht Cannoodt

anndata is a commonly used Python package for keeping track of data and learned annotations, and can be used to read from and write to the h5ad file format. It is also the main data format used in the scanpy python package (Wolf, Angerer, and Theis 2... [Read more...]

lmds: Landmark Multi-Dimensional Scaling

November 26, 2019 | R | Robrecht Cannoodt

Multi-dimensional scaling (MDS) (Kruskal 1964) is a dimensionality reduction method used for visualising and denoising high-dimensional data. However, since MDS requires calculating the distances between all pairs of data points, it does not scale well to datasets with a large number of samples. We released lmds v0.1.0, an implementation of Landmark ...
[Read more...]

Copyright © 2022 | MH Corporate basic by MH Themes

Never miss an update!
Subscribe to R-bloggers to receive
e-mails with the latest R posts.
(You will not see this message again.)

Click here to close (This popup will not appear again)