Combining Histogram and Density Plot
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Visualization is fundamental in gaining insights and understanding the data, yet selecting an appropriate visualization method can often pose a challenge.
In this blog post, I explore combining a histogram (showing the frequency of values of the continuous data within specific intervals) and a density plot (illustrating probability distribution).
Required Packages and Sample Data
if(!require(dplyr)){install.packages("dplyr")} if(!require(ggplot2)){install.packages("ggplot2")} theme_set(theme_bw()) set.seed(42) df <- data.frame( continuous_var = rnorm(500, mean = 30, sd = 20) )
Creating a Histogram
Let’s start by visualizing the distribution of data using a histogram.
n_bin = 20 df %>% ggplot(aes(x = continuous_var, y = after_stat(count))) + geom_histogram(binwidth = n_bin, fill = "skyblue", color = "black") + labs(x = NULL, title = "Histogram")
Creating a Density Plot
Next, generate a density plot to illustrate the probability distribution of the data.
df %>% ggplot(aes(x = continuous_var)) + geom_density(color = "red", linewidth = 1) + labs(x = NULL, title = "Density")
Combining Histogram and Density Plot
Now, let’s combine both graphs. Initially, there’s an issue as the histogram uses ‘count’ on the y-axis, while the density plot employs density distribution on the y-axis. Thus, resulting to below graph.
n_bin = 20 df %>% ggplot(aes(x = continuous_var, y = after_stat(count))) + geom_histogram(binwidth = n_bin, fill = "skyblue", color = "black") + geom_density(color = "red", linewidth = 1) + labs(x = NULL, title = "Histogram & Density - 1")
To address this, I’ll rescale the density values so that the curve matches the y-axis scale of the histogram.
n_bin = 20 max_hist_bin <- max(table(cut(df$continuous_var, breaks = seq(min(df$continuous_var), max(df$continuous_var), by = n_bin)))) max_density_y <- max(density(df$continuous_var)$y) df %>% ggplot(aes(x = continuous_var, y = after_stat(count))) + geom_histogram(binwidth = n_bin, fill = "skyblue", color = "black") + geom_density(aes(y = after_stat(density) * max_hist_bin / max_density_y), color = "red", linewidth = 1) + labs(x = NULL, title = "Histogram & Density - 2")
Lastly I want to incorporate both count and density values. Thus, I add a secondary y-axis with the actual density values rather than the scaled values.
n_bin = 20 max_hist_bin <- max(table(cut(df$continuous_var, breaks = seq(min(df$continuous_var), max(df$continuous_var), by = n_bin)))) max_density_y <- max(density(df$continuous_var)$y) df %>% ggplot(aes(x = continuous_var, y = after_stat(count))) + geom_histogram(binwidth = n_bin, fill = "skyblue", color = "black") + geom_density(aes(y = after_stat(density) * max_hist_bin / max_density_y), color = "red", linewidth = 1) + scale_y_continuous(sec.axis = sec_axis(~ . * max_density_y / max_hist_bin, name = "density")) + labs(x = NULL, title = "Histogram & Density - 3")
This combination helps us to understand both the frequency of values within a specific intervals and a fuller picture of how the data is distributed, making analysis more insightful.
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