Table joins with conditional “fuzzy” string matching in R
[This article was first published on R on Pablo Bernabeu, and kindly contributed to R-bloggers]. (You can report issue about the content on this page here)
Want to share your content on R-bloggers? click here if you have a blog, or here if you don't.
Want to share your content on R-bloggers? click here if you have a blog, or here if you don't.
Here’s an example of fuzzy-matching strings in R that I shared on StackOverflow. In stringdist_join
, the max_dist
argument is used to constrain the degree of fuzziness.
library(fuzzyjoin) library(dplyr) #> #> Attaching package: 'dplyr' #> The following objects are masked from 'package:stats': #> #> filter, lag #> The following objects are masked from 'package:base': #> #> intersect, setdiff, setequal, union library(knitr) small_tab = data.frame(Food.Name = c('Corn', 'Squash', 'Peppers'), Food.Code = c(NA, NA, NA)) large_tab = data.frame(Food.Name = c('Sweet Corn', 'Red Corn', 'Baby Corns', 'Squash', 'Long Squash', 'Red Pepper', 'Green Pepper', 'Red Peppers'), Food.Code = c(532, 532, 944, 111, 123, 654, 655, 654)) joined_tab = stringdist_join(small_tab, large_tab, by = 'Food.Name', ignore_case = TRUE, method = 'cosine', max_dist = 0.5, distance_col = 'dist') %>% # Tidy columns select(Food.Name = Food.Name.x, -Food.Name.y, Food.Code = Food.Code.y, -dist) %>% # Only keep most frequent food code per food name group_by(Food.Name) %>% count(Food.Name, Food.Code) %>% slice(which.max(n)) %>% select(-n) %>% # Order food names as in the small table arrange(factor(Food.Name, levels = small_tab$Food.Name)) # Show table with columns renamed joined_tab %>% rename('Food Name' = Food.Name, 'Food Code' = Food.Code) %>% kable()
Food Name | Food Code |
---|---|
Corn | 532 |
Squash | 111 |
Peppers | 654 |
Created on 2023-05-31 with reprex v2.0.2
To leave a comment for the author, please follow the link and comment on their blog: R on Pablo Bernabeu.
R-bloggers.com offers daily e-mail updates about R news and tutorials about learning R and many other topics. Click here if you're looking to post or find an R/data-science job.
Want to share your content on R-bloggers? click here if you have a blog, or here if you don't.