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When I tried to compile RSQLite from source on Fedora 34, I was awaited by this error message.
Error installing package 'RSQLite': =================================== * installing to library ‘/.../renv/staging/1’ * installing *source* package ‘RSQLite’ ... ** package ‘RSQLite’ successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I. -Ivendor -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DRCPP_DEFAULT_INCLUDE_CALL=false -DRCPP_USING_UTF8_ERROR_STRING -DBOOST_NO_AUTO_PTR -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/../R/x86_64-redhat-linux-gnu-library/4.0/plogr/include' -I'/.../renv/staging/1/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp, -D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c DbColumn.cpp -o DbColumn.o In file included from pch.h:1, from DbColumn.cpp:1: RSQLite.h:9:10: fatal error: Rcpp.h: No such file or directory 9 | #include <Rcpp.h> | ^~~~~~~~ compilation terminated. make: *** [/usr/lib64/R/etc/Makeconf:181: DbColumn.o] Error 1 ERROR: compilation failed for package ‘RSQLite’
To make it work, I think reinstalling Rcpp
package made the difference. I have been upgrading my Fedora lately (bumping from F33 to F34), which leads me to believe that there may have been a change in compiler versions. What I would imagine is that something didn’t play well together.
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