New package in CRAN: PkgsFromFiles
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Its been a while since I write a CRAN package and this weekend I decided
to work on a idea I had some time ago. The result is package
PkgsFromFiles.
When working with different computers at home or work, one of the problems I have is installing missing packages across different computers. As an example, a script that works in my work computer may not work in my home computer. This is specially annoying when I have a fresh install of the operating system or R. In this case, I must manually install all packages, case by case. Instead of focusing on the script at hand, I spend considerable time finding and installing missing packages. When using laptops for teaching R, many times I had to wait for the installation of a package before continuing the class. With my new package, PkgsFromFiles, I can scan any folder of my computer and install all necessary packages before using them, as we will soon learn.
One of the available solutions to this problem is to use package
pacman. It includes
function p_load that will check if a package is available and, if not,
install it from CRAN. However, for me, I like using library and
require as it is consistent with my code format. Also, in a fresh R
install, I rather install all my required packages in a single run so
that I don’t have to wait later.
Package PkgsFromFiles solves this issue by finding and parsing all R related files (.R, .Rmd, .Rnw) from a given folder. It finds all calls to library() and require() and installs all packages that are not available locally.
Installation
# from cran (soon!)
install.packages('PkgsFromFiles')
# from github
if (!require(devtools)) install.packages('devtools')
devtools::install_github('msperlin/PkgsFromFiles')
Usage
The main function of the package is pff_find_and_install_pkgs, which
will search and install missing packages from R files at a given
directory. As an example, we’ll use my research folder from Dropbox. It
contains all R script I have ever used in my research work. Let’s try it
out:
# Evaluation is disable so it passes CRAN CHECKS, but you should be able to run it in your computer library(PkgsFromFiles) # target folder my.dir <- '~/Dropbox/01-Pesquisa/' df <- pff_find_and_install_pkgs(folder.in = my.dir) ## ## Searching folder ~/Dropbox/01-Pesquisa/ ## Found 32 files in 11 folders ## R Scripts: 32 files ## Rmarkdown files: 0 files ## Sweave files: 0 files ## Checking available pkgs from https://cloud.r-project.org ## Checking and installing missing pkgs ## Installing dplyr Already installed ## Installing stringr Already installed ## Installing GetDFPData Already installed ## Installing xlsx Already installed ## Installing googlesheets Already installed ## Installing dplyr Already installed ## Installing purrr Already installed ## Installing tidyverse Already installed ## Installing purrr Already installed ## Installing dplyr Already installed ## Installing stringr Already installed ## Installing purrr Already installed ## Installing purrr Already installed ## Installing GetDFPData Already installed ## Installing dplyr Already installed ## Installing stringr Already installed ## Installing BatchGetSymbols Already installed ## Installing lubridate Already installed ## Installing purrr Already installed ## Installing GetDFPData Already installed ## Installing dplyr Already installed ## Installing stringr Already installed ## Installing plm Already installed ## Installing stargazer Already installed ## Installing RoogleVision Instalation failed, pkg not in CRAN ## Installing dplyr Already installed ## Installing rvest Already installed ## Installing tidyverse Already installed ## Installing furrr Already installed ## Installing XML Already installed ## Installing tidyverse Already installed ## Installing furrr Already installed ## Installing fst Already installed ## Installing rvest Already installed ## Installing tidyverse Already installed ## Installing purrr Already installed ## Installing XML Already installed ## Installing fst Already installed ## Installing furrr Already installed ## Installing stringr Already installed ## Installing tidyverse Already installed ## Installing furrr Already installed ## Installing fst Already installed ## Installing lubridate Already installed ## Installing ggplot2 Already installed ## Installing GetDFPData Already installed ## Installing genderBR Already installed ## Installing BatchGetSymbols Already installed ## Installing tidyverse Already installed ## Installing furrr Already installed ## Installing fst Already installed ## Installing lubridate Already installed ## Installing ggplot2 Already installed ## Installing GetDFPData Already installed ## Installing tidyverse Already installed ## Installing furrr Already installed ## Installing fst Already installed ## Installing lubridate Already installed ## Installing ggplot2 Already installed ## Installing GetDFPData Already installed ## Installing sandwich Already installed ## Installing stargazer Already installed ## Installing tidyverse Already installed ## Installing furrr Already installed ## Installing fst Already installed ## Installing lubridate Already installed ## Installing ggplot2 Already installed ## Installing plm Already installed ## Installing stargazer Already installed ## Installing lmtest Already installed ## Installing MatchIt Already installed ## Installing stringr Already installed ## Installing tidyverse Already installed ## Installing furrr Already installed ## Installing fst Already installed ## Installing lubridate Already installed ## Installing ggplot2 Already installed ## Installing GetDFPData Already installed ## Installing genderBR Already installed ## Installing BatchGetSymbols Already installed ## Installing tidyverse Already installed ## Installing furrr Already installed ## Installing fst Already installed ## Installing lubridate Already installed ## Installing ggplot2 Already installed ## Installing GetDFPData Already installed ## Installing tidyverse Already installed ## Installing furrr Already installed ## Installing fst Already installed ## Installing lubridate Already installed ## Installing ggplot2 Already installed ## Installing GetDFPData Already installed ## Installing plm Already installed ## Installing stargazer Already installed ## Installing tidyverse Already installed ## Installing purrr Already installed ## Installing furrr Already installed ## Installing tidyverse Already installed ## Installing purrr Already installed ## Installing furrr Already installed ## Installing tidyverse Already installed ## Installing purrr Already installed ## Installing GetLattesData Already installed ## Installing furrr Already installed ## Installing tidyverse Already installed ## Installing purrr Already installed ## Installing GetLattesData Already installed ## Installing furrr Already installed ## Installing lubridate Already installed ## Installing tidyverse Already installed ## Installing lubridate Already installed ## Installing lubridate Already installed ## Installing RSelenium Already installed ## Installing stringr Already installed ## Installing RSelenium Already installed ## Installing stringr Already installed ## Installing XML Already installed ## Installing httr Already installed ## Installing stringr Already installed ## Installing XML Already installed ## Installing dplyr Already installed ## Installing stringr Already installed ## Installing tidyverse Already installed ## Installing GetDFPData Already installed ## Installing xlsx Already installed ## Installing stringr Already installed ## Installing XML Already installed ## ## Summary: ## Found 126 packages already installed ## Had to install 0 packages ## Instalation failed for 1 packages ## 1 due to package not being found in CRAN ## 0 due to missing dependencies or other problems ## ## Check output dataframe for more details about failed packages
As you can see, function pff_find_and_install_pkgs will find all R
related files recursively in the given folder. In this case, I have all
packages locally so no installation was required. A summary in text is
shown at the end of execution.
The output of the function is a dataframe with the details of the operation. Have a look:
dplyr::glimpse(df) ## Observations: 127 ## Variables: 3 ## $ pkg <chr> "dplyr", "stringr", "GetDFPData", "xlsx", "goog... ## $ status.message <chr> "Already installed", "Already installed", "Alre... ## $ installation <lgl> TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE,...
The package also includes function pff_find_R_files_from_folder, which
will find all packages used in R related files from a given folder. It
outputs a dataframe with several information about packages used in the
found scripts.
df.files <- pff_find_R_files_from_folder(folder.in = my.dir) ## ## Searching folder ~/Dropbox/01-Pesquisa/ ## Found 32 files in 11 folders ## R Scripts: 32 files ## Rmarkdown files: 0 files ## Sweave files: 0 files dplyr::glimpse(df.files) ## Observations: 32 ## Variables: 5 ## $ files <chr> "/home/msperlin/Dropbox/01-Pesquisa//01-Working Pap... ## $ file.names <chr> "01-Build_Presidents_Table.R", "02-DownloadPictures... ## $ extensions <chr> "R", "R", "R", "R", "R", "R", "R", "R", "R", "R", "... ## $ pkgs <chr> "dplyr ; stringr ; GetDFPData ; xlsx", "googlesheet... ## $ n.pkgs <int> 4, 4, 1, 3, 6, 6, 2, 4, 3, 6, 9, 6, 8, 5, 4, 1, 9, ...
I also wrote a simple function for plotting the most used packages for a given folder:
# target folder my.dir <- '~/Dropbox/01-Pesquisa/' # plot most used pkgs p <- pff_plot_summary_pkgs(folder.in = my.dir) ## ## Searching folder ~/Dropbox/01-Pesquisa/ ## Found 32 files in 11 folders ## R Scripts: 32 files ## Rmarkdown files: 0 files ## Sweave files: 0 files print(p)
As you can see, I’m a big fan of the tidyverse!
Hope you guys find the package useful! Fell free to send any question to the comment section of the post or my email ([email protected]).
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