Manipulate Biological Data Using Biostrings Package Exercises(Part 4)
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Bioinformatics is an amalgamation Biology and Computer science. Biological Data is manipulated using Computers and Computer software’s in Bioinformatics. Biological Data includes DNA; RNA & Proteins. DNA & RNA is made of Nucleotide which are our genetic material in which we are coded.Our Structure and Functions are done by protein, which are build of Amino acids
Here in this we try to manipulate DNA, RNA, Protein strings using Biostring Package
Install Packages
Biostrings
Answers to the exercises are available here.
If you obtained a different (correct) answer than those listed on the solutions page, please feel free to post your answer as a comment on that page.
Exercise 1
Create an RNA string and find palindromes in the sequence
Exercise 2
Create a DNA string and find palindromes in the sequence
Exercise 3
Create a DNA string and find the dinucleotide frequency of the sequences
Exercise 4
Create an RNA string and find the dinucleotide frequency of the sequences
- import data into R in several ways while also beeing able to identify a suitable import tool
- use SQL code within R
- And much more
Exercise 5
Create a DNA string and find the oligonucleotide frequency in the sequences
Exercise 6
Create an RNA string and find the oligonucleotide frequency in the sequences
Exercise 7
Create a DNA string and find the trinucleotide frequency in the sequences
Exercise 8
Create an RNA string and find the trinucleotide frequency in the sequences
Exercise 9
Print amino acid alphabets
Exercise 10
Create an Amino acid string and print the frequency of the amino acid strings in the sequence
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