Make prettier documents by reusing chunks in RMarkdown
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No revelations here, just a little R tip for generating more readable documents.
There are times when I want to show code in a document, but I don’t want it to be the first thing that people see. What I want to see first is the output from that code. In this silly example, I want the reader to focus their attention on the result of myFunction(), which is 49.--- title: "Testing chunk reuse" author: "Neil Saunders" date: "24/02/2015" output: html_document --- ## Introduction Here is my very interesting document. But first, let me show you my long and ugly R function. ```{r chunk 1} # it's not really long and ugly # it just squares the input # but imagine that it is long and ugly myFunction <- function(x) { print(x ^ 2) } myFunction(7) ```I could define myFunction() later in the document but of course that leads to an error when the function is called before it has been defined.
--- title: "Testing chunk reuse" author: "Neil Saunders" date: "24/02/2015" output: html_document --- ## Introduction Here is my very interesting document. ```{r chunk1} myFunction(7) ``` ## This is chunk 2 My long and ugly R function is now down here. ```{r chunk2} # it's not really long and ugly # it just squares the input # but imagine that it is long and ugly myFunction <- function(x) { print(x ^ 2) } ```
Solution: use the chunk option ref.label to call chunk 2 from chunk 1. You can also use echo=FALSE to hide chunk1 in the final document, but still see the code (in chunk 2) and its output.
--- title: "Testing chunk reuse" author: "Neil Saunders" date: "24/02/2015" output: html_document --- ## Introduction Here is my very interesting document. Chunk 1 is calling chunk 2 here, but you can't see it. ```{r chunk1, ref.label="chunk2", echo=FALSE} ``` ## This chunk is unnamed but can now use code from chunk 2 ```{r} myFunction(7) ``` ## This is chunk 2 My long and ugly R function is now down here. ```{r chunk2} # it's not really long and ugly # it just squares the input # but imagine that it is long and ugly myFunction <- function(x) { print(x ^ 2) } ```And here’s the result.
Filed under: programming, R, statistics Tagged: how to, knitr, rmarkdown, rstats
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