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Towards the basic R mindset.
Previously
The post “A first step towards R from spreadsheets” provides an introduction to switching from spreadsheets to R. It also includes a list of additional posts (like this one) on the transition.
Add two columns
Figure 1 shows some numbers in two columns and the start of adding those two columns to each other in a third column.
Figure 1: Adding two columns in a spreadsheet.
The next step is to fill the addition formula down the column.
It is not so different to do the same thing in R. First create two objects that are equivalent to the two columns in the spreadsheet:
A <- c(32.5, -3.8, 15.9, 22.5) B <- c(48.1, 19.4, 46.8, 14.7)
In those commands you used the c
function which combines objects. You have created two vectors. The rules for a vector are:
- it can be any length (up to a very large value)
- all the elements are of the same type — all numbers, all character strings or all logicals
- the order matters (just like it matters which row a number is in within a spreadsheet)
To summarize: they’re in little boxes and they all look just the same.
You have two R vectors holding your numbers. Now just add them together (and assign that value into a third name):
C <- A + B
This addition is precisely what is done in the spreadsheet: the first value in C is the first value in A plus the first value in B, the second value in C is the second value in A plus the second value in B, and so on.
See the values in an object by typing its name:
> C [1] 80.6 15.6 62.7 37.2
The “>
” is the R prompt, you type only what is after that: ‘C
‘ (and the return or enter key).
Also note that R is case-sensitive – C
and c
are different things:
> c function (..., recursive = FALSE) .Primitive("c")
(Don’t try to make sense of what this means other than that c
is a function.)
Multiply by a constant
One way of multiplying a column by a constant is to multiply the values in the column by the value in a single cell. This is illustrated in Figure 2.
Figure 2: Multiply a column times the value in a single cell, shown before filling down column E.
Another way of doing the same thing is to fill the value in D1 down column D and then multiply the two columns.
Do this operation in R with:
> C * 33 [1] 2659.8 514.8 2069.1 1227.6
In this command you didn’t create a new object to hold the answer.
You can think of R as doing either of the spreadsheet methods, but the fill-down image might be slightly preferable.
Recycling in R
The R recycling rule generalizes the idea of a single value expanding to the length of the vector. It is possible to do operations with vectors of different lengths where both have more than one element:
> 1:6 + c(100, 200) [1] 101 202 103 204 105 206
Figure 3 illustrates how R got to its answer.
Figure 3: Equivalent of the example of R’s recycling rule.
Column F shows how column G was created: use the ROW function and fill it down the column. That sequence of numbers was created in R with the `:`
operator.
Note how the shorter vector is replicated to the length of the longer one. Each value is used in order, and when it reaches the end it goes back to the beginning again.
You are free to think this is weird. However, it is often useful.
Functions
Table 1 translates between spreadsheet and R functions. The spreadsheets consulted were Excel, Works and OpenOffice. Note there is some variation between spreadsheets.
Table 1: Equivalent functions between spreadsheets and R.
spreadsheet | R | comment |
ABS | abs |
|
ADDRESS | perhaps assign but there is probably a better way |
|
AND | all |
more literally would be the & and && R operators |
AVERAGE | mean |
danger: mean accepts only one data argument |
AVG | mean |
this danger of mean is discussed in Circle 3 of The R Inferno |
AVERAGEIF | subscript before using mean |
|
BESSELI | besselI |
|
BESSELJ | besselJ |
|
BESSELK | besselK |
|
BESSELY | besselY |
|
BETADIST | pbeta |
|
BETAINV | qbeta |
|
BINOMDIST | pbinom or dbinom |
pbinom when cumulative, dbinom when not |
CEILING | ceiling |
|
CELL | str is sort of the same idea |
|
CHIDIST | pchisq |
CHIDIST(x, df) is pchisq(x, df, lower.tail=FALSE) |
CHIINV | qchisq |
CHIINV(p, df) is qchisq(1-p, df) |
CHISQDIST | pchisq or dchisq |
pchisq when cumulative, dchisq when not |
CHISQINV | qchisq |
|
CHITEST | chisq.test |
|
CHOOSE | switch |
|
CLEAN | gsub |
|
COLS | ncol | (Works) |
COLUMNS | ncol | (Excel, OpenOffice) |
COLUMN | col | or probably more likely : or seq |
COMBIN | choose |
|
CONCATENATE | paste |
|
CONFIDENCE | CONFIDENCE(alpha, std, n) is -qnorm(alpha/2) * std / sqrt(n) |
|
CORREL | cor |
|
COUNT | length |
|
COUNTIF | get length of a subscripted object | |
COVAR | cov |
|
CRITBINOM | qbinom |
CRITBINOM(n, p, a) is qbinom(a, n, p) |
DELTA | all.equal or identical |
all.equal allows for slight differences, and note that it does not return a logical if there’s a pertinent difference — you can wrap it in isTRUE if you want |
DGET | use subscripting in R | |
ERF | see the example in ?"Normal" |
|
ERFC | see the example in ?"Normal" |
|
EXACT | == |
EXACT is specific to text, == is not |
EXP | exp |
|
EXPONDIST | pexp or dexp |
pexp when cumulative, dexp when not |
FACT | factorial |
|
FACTDOUBLE | dfactorial |
dfactorial is in the phangorn package |
FDIST | pf |
FDIST(x, df1, df2) is pf(x, df1, df2, lower.tail=FALSE) |
FIND | regexpr |
|
FINV | qf |
FINV(p, df1, df2) is qf(1-p, df1, df2) |
FISHER | atanh |
|
FISHERINV | tanh |
|
FIXED | format or sprintf or formatC |
|
FLOOR | floor |
|
FORECAST | predict on an lm object |
|
FREQUENCY | you probably want to use cut and/or table |
|
FTEST | var.test |
|
GAMMADIST | pgamma or dgamma |
GAMMADIST(x, a, b, TRUE) is pgamma(x, a, scale=b) GAMMADIST(x, a, b, FALSE) is dgamma(x, a, scale=b) |
GAMMAINV | qgamma |
GAMMAINV(p, a, b) is qgamma(p, a, scale=b) |
GAMMALN | lgamma |
|
GAUSS | GAUSS(x) is pnorm(x) - 0.5 |
|
GCD | gcd |
gcd is in the schoolmath package (and others). For more than two numbers you can do: Reduce(gcd, numVector) |
GEOMEAN | exp(mean(log(x))) |
|
GESTEP | >= |
GESTEP(x, y) is as.numeric(x >= y) but R often coerces automatically if needed |
HARMEAN | harmonic.mean |
harmonic.mean is in the psych package |
HLOOKUP | use subscripting in R | |
HYPGEOMDIST | dhyper |
HYPGEOMDIST(x, a, b, n) is dhyper(x, b, n-b, a) |
IF | if or ifelse |
see Circle 3.2 of The R Inferno on if versus ifelse |
IFERROR | try or tryCatch |
|
INDEX | [ |
use subscripting in R |
INDIRECT | get |
or possibly the eval-parse-text idiom, or (better) make changes that simplify the situation |
INT | floor |
danger: not the same as as.integer for negative numbers |
INTERCEPT | (usually) the first element of coef of an lm object |
|
ISLOGICAL | is.logical |
|
ISNUMBER | is.numeric |
|
ISTEXT | is.character |
|
KURT | kurtosis |
kurtosis is in the moments package |
LARGE | you can use subscripting after sort |
|
LCM | scm |
scm is in the schoolmath package. For more than two numbers you can do: Reduce(scm, numVector) |
LEFT | substr |
|
LEN | nchar |
(Excel, OpenOffice) |
LENGTH | nchar |
(Works) |
LINEST | use lm |
|
LN | log | danger: the default base in R for log is e |
LOG | log | danger: the default base in spreadsheets for log is 10 |
LOG10 | log10 | |
LOGINV | qlnorm | |
LOGNORMDIST | plnorm | |
LOWER | tolower |
|
MATCH | match or which |
match only does exact matches. Given that MATCH demands a sorted set of values for type 1 or -1, then MATCH(x, vec, 1) is sum(x <= vec) and MATCH(x, vec, -1) is sum(x >= vec) when vec is sorted as MATCH assumes. |
MAX | max or pmax |
max returns one value, pmax returns a vector |
MDETERM | det |
|
MEDIAN | median | |
MID | substr |
|
MIN | min or pmin |
min returns one value, pmin returns a vector |
MINVERSE | solve |
|
MMULT | %*% |
|
MOD | %% |
|
MODE | the table function does the hard part. A crude approximation to MODE(x) is as.numeric(names(which.max(table(x)))) |
|
MUNIT | diag |
diag is much more general |
N | as.numeric |
the correspondence is for logicals, as.numeric is more general |
NEGBINOMDIST | dnbinom |
|
NORMDIST, NORMSDIST | pnorm or dnorm |
pnorm when cumulative is true, dnorm when false |
NORMINV, NORMSINV | qnorm |
|
NOT | ! |
|
NOW | date or Sys.time |
|
OR | any |
the or operators in R are | and || |
PEARSON | cor |
|
PERCENTILE | quantile |
|
PERCENTRANK | similar to ecdf but the argument is removed from the distribution in PERCENTRANK |
|
PERMUT | function(n,k) {choose(n,k) * factorial(k)} |
|
PERMUTATIONA | PERMUTATIONA(n, k) is n^k |
|
PHI | dnorm |
|
POISSON | ppois or dpois |
ppois if cumulative, dpois if not |
POWER | ^ |
|
PROB | you can use the Ecdf function in the Hmisc package (the probabilities in the spreadsheet are the weights in Ecdf ), then you can get the difference of that on the two limits |
|
PRODUCT | prod |
|
PROPER | see example in ?toupper |
|
QUARTILE | use quantile |
|
QUOTIENT | %/% |
|
RAND | runif | see an introduction to random generation in R |
RANDBETWEEN | use sample |
|
RANK | rank | RANK has the "min" tie.method and defaults to biggest first.rank only has smallest first. To get biggest first in R you can do: length(x) + 1 - rank(x) |
REPLACE | sub or gsub |
|
REPT | use rep and paste or paste0 |
|
RIGHT | substring |
you’ll also need nchar to count the characters. Alternatively you can use str_sub in the stringr package with negative limits |
ROUND | round |
note: round rounds exact halves to even (which avoids bias) |
ROUNDDOWN | trunc |
trunc only goes to integers |
ROW | row | or probably more likely : or seq |
ROWS | nrow |
|
RSQ | in summary of an lm object |
|
SEARCH | regexpr |
also see grep |
SIGN | sign |
|
SKEW | skewness | skewness is in the moments package |
SLOPE | in coef of an lm object |
|
SMALL | you can use subscripting after sort |
|
SQRT | sqrt |
|
STANDARDIZE | scale |
|
STD | sd |
(Works) |
STDEV | sd |
(Excel, OpenOffice) |
STEYX | predict on an lm object |
|
STRING | format or sprintf or formatC or prettyNum |
(Works) |
SUBSTITUTE | sub or gsub |
or possibly paste |
SUM | sum |
sum is one of the few R functions that allow multiple data arguments |
SUMIF | subscript before using sum |
|
SUMPRODUCT | crossprod |
|
TDIST | pt |
TDIST(abs(x), df, tails) is pt(-abs(x), df) * tails |
TEXT | format or sprintf or formatC or prettyNum |
|
TINV | TINV(x, df) is abs(qt(x/2, df)) |
|
TODAY | Sys.Date |
|
TRANSPOSE | t |
|
TREND | fitted of an lm object |
|
TRIM | sub |
|
TRIMMEAN | mean |
TRIMMEAN(x, tr) is mean(x, trim=tr/2) |
TRUNC | trunc |
|
TTEST | t.test |
|
TYPE | similar concepts in R are typeof , mode , class . Use str to understand the structure of objects |
|
UPPER | toupper |
|
VALUE | as.numeric |
|
VAR | var |
|
VLOOKUP | use subscripting in R | |
WEEKDAY | weekdays |
|
WEIBULL | pweibull or dweibull |
pweibull when cumulative, dweibull when not |
ZTEST | use pnorm on the calculated statistic |
The trigonometric functions, like cos
, acos
, acosh
are the same, except the R functions are all in lowercase.
Arguments
Spreadsheets show you the arguments of a function. The args
function in R provides similar information. For example:
> args(sample) function (x, size, replace = FALSE, prob = NULL) NULL
This shows that replace
and prob
both have default values, and so are not required. Actually size
is not required either — x
is the only mandatory argument.
You will learn to not even see the NULL
on the final line of the result of args
.
Help
You can get help for a function with the question mark operator:
?sample
This will show you the help file for the object — sample
in this case. It is best not to let yourself be overwhelmed by a help file.
R vectorization
Most of the R functions are vectorized.
This is like creating a new spreadsheet column where an argument of the function is a value from the same row but a different column. Think of putting =EXP(A1)
in cell B1 and then filling it down.
Figure 4: EXP example of the vectorization idea, shown before column K is filled down.
Giving a vector to exp
returns the exponential of each of the values in the input vector:
> exp(0:5) [1] 1.000000 2.718282 7.389056 20.085537 [5] 54.598150 148.413159
The result is a vector of length 6 — the same length as the input. The number in square brackets at the start of each line of output is the index number of the first item on the line.
Some R resources
“Impatient R” provides a grounding in how to use R.
“Some hints for the R beginner” suggests additional ways to learn R.
Epilogue
And they’re all made out of ticky tacky
And they all look just the same
from “Little Boxes” by Malvina Reynolds (1900 – 1978)
The post From spreadsheet thinking to R thinking appeared first on Burns Statistics.
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