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“It seems quite absurd to reject an EP-based approach, if the only alternative is an ABC approach based on summary statistics, which introduces a bias which seems both larger (according to our numerical examples) and more arbitrary, in the sense that in real-world applications one has little intuition and even less mathematical guidance on to why p(θ|s(y)) should be close to p(θ|y) for a given set of summary statistics s.”
Simon Barthelmé and Nicolas Chopin posted a recent arXiv paper on Expectation-Propagation for Summary-Less, Likelihood-Free Inference. They sell expectation-propagation as quick and dirty version of ABC, avoiding the selection of summary statistics by using the constraint
on each component of the simulated pseudo-data vector y* being the actual data. Expectation-propagation is a variational technique [Simon and Nicolas are quite fond of!] and it consists in replacing the target with the “closest” member from an exponential family, like the Gaussian distribution. The expectation-propagation approximation is found by including a single “observation” at a time, using the other approximations for the prior, and finding the best Gaussian in this pseudo-model. In addition, expectation-propagation provides an approximation of the evidence. In the “likelihood-free” setting (I do not like this term because we are dealing with a specific well-defined likelihood, we simply cannot compute it!), this means computing empirical mean and empirical variance, one observation at a time, under the above tolerance constraint.
Filed under: R, Statistics, University life Tagged: ABC, Bayesian model choice, evidence, expectation-propagation, summary statistics, variational Bayes methods
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