[This article was first published on chem-bla-ics, and kindly contributed to R-bloggers]. (You can report issue about the content on this page here)
Want to share your content on R-bloggers? click here if you have a blog, or here if you don't.
The Applied Bioinformatics at PRI group where I now work in Wageningen and the group of Steffen Neumann in Halle have started the MetWare project on Sourceforge to develop opensource databases for metabolomics data.Want to share your content on R-bloggers? click here if you have a blog, or here if you don't.
The databases design will be based on and ideally compatible with proposed standards like ArMet (DOI:10.1038/nbt1041) and those recently written up by the Metabolomics Standards Initiative (see the issue around DOI:10.1007/s11306-007-0070-6).
One important design goal is that the project will use BioMart, which will allow easy integration of the database content in data analysis programs like Taverna and R using the biomaRt package (see DOI:10.1093/bioinformatics/bti525).
Though the software will be opensource, it is yet unsure how much data will be open.
To leave a comment for the author, please follow the link and comment on their blog: chem-bla-ics.
R-bloggers.com offers daily e-mail updates about R news and tutorials about learning R and many other topics. Click here if you're looking to post or find an R/data-science job.
Want to share your content on R-bloggers? click here if you have a blog, or here if you don't.